rs27460923 SNP Detail

Summary

• ID
  rs27460923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118093046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATATTTT GCATAAAACA
  ATCTTGATAA GTTACCTTCC GTCTCTATAT TCTCCCCACT TGATTCGCTT CCAACTGTTC
  TCGTTTTGCT AACTGCTTAG AGGCTCTGTG GACCTTGAGA GCAAACTTTA ATAAACCACT
  TTGTTTTGTA TTTTGTCCTC ATTTCTTGCA TGTACTTCTG CATCATATCG AGGGCAACAC
  Y
  CTCAAAACAG TTACCATTCA AATATGACAG AACGTGCCAT CTTTTCCTAA GCTGTGTTTT
  CTACAGTTCT GTGTTCTTCT GTGGGTACTC TCTGAAGAGT GTTACTCCTT CTCGAGGAAT
  TCATGAGTAG TTTTTGTAGA ATGAATGTAT TTTAAGCTAA CTTCCCCTGG TCTTATTCCA
  GGGTGGGCAC ATATGGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss37653647	NES09024452	PERLEGEN	MM_PANEL2	f	SNP				T	T		C
ss147293626	ENSMUSSNP4640355	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs27460923					SNP	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653647	NES09024452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118093046 () rs orientation: forward

Symbol	Name	Function Class
Gm29232	predicted gene 29232	within coordinates
Gm75384	predicted gene, 75384	1039 bp upstream
Rr397203	regulatory region 397203	703 bp upstream
Rr563206	regulatory region 563206	549 bp proximal
Rr563207	regulatory region 563207	752 bp proximal
Rr563208	regulatory region 563208	1077 bp proximal
Rr563209	regulatory region 563209	1263 bp proximal