rs27460921 SNP Detail

Summary

• ID
  rs27460921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118093506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGAGTG GAGTCAGATT
  TGAAGGACTG AGAAAAAGCC CACATTGCAT TCCATCTGGG CTCCAACTGC CAGATGCAGT
  GCCCCGGCTT CCCTCTTCGC ACCATAAGCT CATGCCAACT GTAACGTTGA GATGGGAGAG
  CATAGTTATC ACAGACCAAG CTCAAAAGCC TTTTCTTCCT AAGGGTTGTT AATAGTGTGC
  R
  CCACGATGGG GCCCCAGCTC CCCGGATTCT GTGCCTTACA TCACTGGAAA AAAAAAATGA
  CATTTACAGG ATGCTCAAGA CATGGCTCGG ATTCTTCATT TCCCATTTAT TTCCCCACAC
  CCCCCTGGTT GGCATAATGA TTGTGCAGAT TTATATTTGG GAAGGTGAGC AGCAAAAGAT
  TAGTGTCCGC TCCCCATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37653645	NES09024456	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27460921					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653645	NES09024456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118093506 () rs orientation: forward

Symbol	Name	Function Class
Gm29232	predicted gene 29232	within coordinates
Gm75384	predicted gene, 75384	579 bp upstream
Rr397203	regulatory region 397203	243 bp upstream
Rr563206	regulatory region 563206	89 bp proximal
Rr563207	regulatory region 563207	292 bp proximal
Rr563208	regulatory region 563208	617 bp proximal
Rr563209	regulatory region 563209	803 bp proximal