rs27458473 SNP Detail

Summary

• ID
  rs27458473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114682631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTAATA TGTAAAGGGT
  TCGTGTGGTT TTAAATAAGG CAATGCCACC CAGCATCATC ACATGCTTCA TGAGAAAAAG
  ATGCTAAATT TCCTTGACCT ACTTTCATCT TCGTGTTTAG GAAACAGTGC CTAAGAAGTA
  AACAAAGTAT TTGTGCCTCA CGTAGGAGAT GATTATTGTT TGAATTTATG ATTCATGCCT
  Y
  GAGCAAAATT TTGTTTGTGG CCTCATTTGC AACCATAATT TACAACGTTA CCAGGGACAT
  GCAATGTATT TGGAAGGCAA TATATCAGAC TTGCTTTGTA CTGGAGCAGT CTTCTGGCTC
  TGGGTATAGT ATTTTCTGTG TTTCTCTTAG CTATAAAATT TCTAGGCATA ACATTTATTG
  TAGTGAATAT GGAAATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37664601	NES09032433	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458473					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664601	NES09032433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114682631 () rs orientation: forward

Symbol	Name	Function Class
Gm13974	predicted gene 13974	1746 bp upstream
Rr1575	regulatory region 1575	859 bp proximal
Rr562876	regulatory region 562876	1469 bp proximal
Rr562877	regulatory region 562877	1884 bp proximal
Rr562878	regulatory region 562878	1964 bp proximal