rs27458469 SNP Detail

Summary

• ID
  rs27458469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114684319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCCATAG TATTTCAAAT
  GCTACAGGCC TTATGTAATA ATTTTAATGC GAAAAATATG TAGGCCACGC TTCGCTGCTC
  TTTGCATATA CTGCAAAGAG AGGGGGGACC CTTAAAAATT GCTTAGCTTT AATTGAGCAA
  AAGGATTCAC GTGTGATCTG AACTTGTGGC TCGTAATTCC TCTAGACAGC TTTGGTTGCC
  R
  TGTGATGATC CTAATTAAAT TATGGAACAG CACTGCACTA CCTAAGCGAA AGGGCCCATT
  CTTTGCTATC ACCTGGTAAC TTAACTGTTT GCAGGGTTCT GAGTTTGGGA CTTGGCTGTG
  TTCTATTGTG AGCTTGTGTG CTTTTCATTG TTAGGGGTAG GAAAACAGTT GCTGGTGGAA
  TCGGCCTTGA AAGTTTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37664597	NES09032439	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		G	A	A	A	G	A	A	G	G
ss45250403	mCV25120115	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss147254879	ENSMUSSNP3473055	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458469					SNP	G	A	A	A	G	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664597	NES09032439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114684319 () rs orientation: forward

Symbol	Name	Function Class
Gm13974	predicted gene 13974	58 bp upstream
Rr1575	regulatory region 1575	within coordinates
Rr562876	regulatory region 562876	within coordinates
Rr562877	regulatory region 562877	196 bp proximal
Rr562878	regulatory region 562878	276 bp proximal