rs27458466 SNP Detail

Summary

• ID
  rs27458466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114684791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGGCT CCCATCTCTT
  CAGGCTGGGC TAACATCATT ACACACTCCT GTCAGGTAAA AGTAAAATGG GGAGAAATGT
  CAAAGCCAAA AAAATTAGAC TTCATTCACT TTGGTCTGTG TTTCATTATA TTTCTGATAA
  TAGGGTACAT TTGTAATTCT GAGCCGGGAT TCCGCTGAAG GAGGTGCTGA GCAGTCAGGC
  K
  TTAACCCTTG GCAAACCCTT CTTCAACAGT CTGACTAACT TAGGAAAGGA AACTAGTCTT
  TGTGGGGAAC GATTACGTTA ATCACACCCA GTATGAACAC TTGGGACCTT TATGGGGTTT
  TGAGATTTTG TAGCAAAAGC AGGTCTTGAG GTCGCCACAG CTTTCCGGTA TCCTGATGAA
  GTTTGTCCTT CCCACTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37664594	NES09032443	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		G	G	G	G	G	G	G	G	G
ss45200689	mCV25120114	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss147254884	ENSMUSSNP4644592	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458466					SNP	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664594	NES09032443	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114684791 () rs orientation: forward

Symbol	Name	Function Class
Gm13974	predicted gene 13974	within coordinates
Rr1575	regulatory region 1575	within coordinates
Rr562876	regulatory region 562876	197 bp distal
Rr562877	regulatory region 562877	255 bp distal
Rr562878	regulatory region 562878	within coordinates