rs27458462 SNP Detail

Summary

• ID
  rs27458462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114686387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGCTGT GCTTTAAGGT
  TTTGGTACAT CTGCATTTTC TAAAGGGCCA AGGGGGATAC GAGTTGACTG GTTGTATTTG
  GGGCAAGCAC CAGTTCCTGC CTCGGTATTT AAGCAGCAAA ATAATCAATA GCATTAATGA
  CCTAGGAAAC CAGAGTCTGC TAACTTTCCA GCCATCTCTG CAGTCCCAGT GCGTGGTGTG
  Y
  TTGGGTGCCA CAAACAAGAC TCTGACAAGT TGTCACTGCC CCTGACCTGA TGCCCAAGTT
  TGTGAGGTGA GAGGCTCTTA AATCTTTCTT TTCTGTAACC CACAGTTTCA GGTCTTGCAG
  TTCCTGCCAA GACAAGCCAT CATGTGACCT CAGAGTTATG AAGGAACTTG GCTTTTAGAG
  TAGAGATGAC TAAATAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37664590	NES09032380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27458462					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37664590	NES09032380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114686387 () rs orientation: forward

Symbol	Name	Function Class
Gm13974	predicted gene 13974	within coordinates
Rr1575	regulatory region 1575	1404 bp distal
Rr562876	regulatory region 562876	1793 bp distal
Rr562877	regulatory region 562877	1851 bp distal
Rr562878	regulatory region 562878	1367 bp distal