rs27458112 SNP Detail

Summary

• ID
  rs27458112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118526352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTGGGG CCCATACCAA
  CACAGTGCCA TCACATGATT GGGCTTGTCC TCCTGTATGA CACATCTCGA TCATAGCTGA
  GCCACTGTTT GCGCCTTAGA CCCAGTATCT ATACTTATTA TAATTAACTC TCTCCTGCCA
  AATAAATCCA TTCCCCTGCT GCCAGATTGC CACAGGACAG ACAGCTAAAT GGTACTGCCA
  Y
  CTAGTGGCCA AAGCTAAAAA ATGCCCCAGA GGATTGATGC CCGGTTTCTA ACAGGCTCTA
  AGACAGCTTG GTCCCTGGAG ACTGCCCTGC GAAGCCTGAG ATGAGCAGGT CTCAAAGAGC
  ACCCGTTAGT TAGTTAACTG CTCCAGGGGG GCAGCCTTCT GTAGCATTCC CCAGGCAGCC
  CGGTAGATGA GGAACTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37652322	NES09028442	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27458112					SNP	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652322	NES09028442	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118526352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pak6	p21 (RAC1) activated kinase 6			Intron
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			within coordinates
Rr563300	regulatory region 563300			within coordinates
Rr563301	regulatory region 563301			921 bp proximal
Rr563302	regulatory region 563302			1823 bp proximal