rs27458110 SNP Detail

Summary

• ID
  rs27458110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118526983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGAT GAGGTGTGGA
  GCTAGTGGGG GCCCAGCAAT CAGGCCGCCG AGAAGTGACT GCGAGCCATG GCTTCCCCTC
  ACCCCCTCAC GGTTCTGTTC CATAGGTCTC TCCAGTGCTG CGAGACTTCC TGGATCGGAT
  GCTGGTACGG GAACCCCAAG AGCGAGCCAC GGCCCAGGAG CTTCTGGATC ACCCGTTTCT
  R
  CTGCAGACGG GGCTGCCTGA GTGTCTGGTG CCTCTGATAC AGCTCTACCG CAAGCAGACC
  TCCACCTGCT GAGCCCGCAC CCAGGGTGCA CCTGCCACCT GTGCCCACAG GCAAAGGACA
  CTGGACAGCC GTTCCATTGG CAAGGCCTAC CCGCCTTGCC CTCTCAGTGT TCTCTCCAAA
  GATCGAATGT GAAGCTCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37652320	NES09028444	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27458110					SNP	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652320	NES09028444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118526983 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12087	CpG island 12087			within coordinates
Pak6	p21 (RAC1) activated kinase 6			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			314 bp distal
Rr563300	regulatory region 563300			619 bp distal
Rr563301	regulatory region 563301			290 bp proximal
Rr563302	regulatory region 563302			1192 bp proximal