rs27456340 SNP Detail

Summary

• ID
  rs27456340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115488206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCAGCC AGGGAGATTT
  GCAGAGCTGT CTCCGGGTGT TTGAAAGGCC CATTCATCAT GTCCTACAAG TAGTCAATTC
  CTCTAGTATC TGTAAATGTT TTCAGATATT AGCCAATTTA TATGCTCTGA GATTCATCAT
  GGAAAATCAG CTTTACCATC GTGCATTATC TCCATCTGAG ATGAAGTTTG ATATATGAGC
  R
  TCTTTGCAGT TCAATGAGTT GTGTGCAAAA AAGTACGTTT TTAATTAATA AACAAATTTG
  CTCAGGAGCT CATCAGCGTC AGGAGTAATA ACGATTGTCA TTCATTATTG TTTATTACAT
  CCCTCCCGCA ACAAATGTTG CCTTCTAATG AGATTTCTTT CCTATTTTTT AATTTAGTTA
  ATGGCATTTT CATCCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37662184	NES09034247	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27456340					SNP	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37662184	NES09034247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115488206 () rs orientation: forward

Symbol	Name	Function Class
Cdin1	CDAN1 interacting nuclease 1	Intron
Rr406526	regulatory region 406526	within coordinates
Rr562937	regulatory region 562937	within coordinates
Rr562938	regulatory region 562938	1904 bp proximal