rs27456338 SNP Detail

Summary

• ID
  rs27456338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115490671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAAGAT TAATTACAAC
  CGAAGAGATG TATCTTTTAA CTGTCTCATT ACATAAAGAA TTCATAGTGA AGTTAACGTC
  CGCATAATTT AATGATATAC AGATTTTAAT TATATAGTAC ACTGTTAATT GCACGGCTAT
  TTTTAGATCA GGGTTCCAAC TTATTCAGTT AAATGAATAA CTCACTTGCT CAAGGTATCA
  R
  AATATGGGCC TTCTTAAAAA CTTGTACTCA AGCCTCTGCA TATTTTTTTA AACCTGATAG
  ATTATTCTGC TGTTTGTTTC TCCTTGGAAT GAGGGTGACC TGTACCTTGC CTTCAGCTCC
  TAGCACCTCA CACATAGGAC CTTGACCTTC CTTTGAGGGA AGGGGGCAGA CAAGCTCTGA
  TAACTAGTAC AGTATAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37662182	NES09034249	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A	A	A	A
ss147265745	ENSMUSSNP5710895	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27456338					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37662182	NES09034249	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115490671 () rs orientation: forward

Symbol	Name	Function Class
Cdin1	CDAN1 interacting nuclease 1	Intron
Rr406526	regulatory region 406526	1942 bp distal
Rr562938	regulatory region 562938	within coordinates