rs27456327 SNP Detail

Summary

• ID
  rs27456327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115493100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGCGGC TTGACGGGAA
  GCATCCTTGC CTCCTGAGCT AGCTCACCAG CTCCATTTAC ATTTCAAAAT GGAAAGTCAT
  CATTCTACTT TAAGAGATAG AGTATTTTGA CTTGAATACA AAATACTTAC AAAATGATAG
  ATAATTGCTA CAAAAGTTAT ATTACATGCT AATAAAGCCA TTCCTATGCT TCTGTCAGAG
  R
  TAAACACTAC CCTTTAGCCA GTACACATGC TTAGATGTTT TCAATACCTC TCTAAGATAC
  ATTGTATTAT ATTGCTCCTT ATTCTTTTTC TCTGGAATGA ATTTTTATGC CCATTCATTC
  TTAATAAGGA AAACCACAAG TCAAATGTAC TTGGCTATAA AAAAAATCAC CTCAATAATT
  GCAAATACAA ACAGGACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37662170	NES09034082	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27456327					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37662170	NES09034082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115493100 () rs orientation: forward

Symbol	Name	Function Class
Cdin1	CDAN1 interacting nuclease 1	Intron
Rr562938	regulatory region 562938	1461 bp distal