rs27456019 SNP Detail

Summary

• ID
  rs27456019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119345974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGTGAAC CACCATCTGG TTGCTGGGAA TTGAAGTCAG
  GGCCTTTGGA AAAGCAGTCA GTACTCTTAA CTGCTGAGCC ATCTTTCCAG CACCCCACAC
  Y
  ATCCTTTTTT AAGGCAAAAA TCTTAGTATA GGCCTATGGC TTTTTATAAT ATGCACTAGT
  TTATGTCATC CAGTCACTGT GTATAAATAT TGATCCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650167	NES09017716	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	C	T	C		T	C	C	T		C
ss147334461	ENSMUSSNP6808542	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320475848	CHEV_2_119341229	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27456019					SNP	T	T	C	T	C	T	C	C	C	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650167	NES09017716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119345974 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	1012 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	311 bp distal
Rr563520	regulatory region 563520	114 bp distal
Rr563521	regulatory region 563521	1397 bp proximal