rs27456015 SNP Detail

Summary

• ID
  rs27456015
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119346175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATCTCCC CTCCCTGCCT CAGGATTTGG AATTCCAAGT
  CAGATTATTC AATCACAGGA AGATTTATAT TGGCACTCAC TCAACAGCTG AGTAGTTATT
  K
  CTCCCTCCAG TTCTGCATTA TCCTTATTCT ATTTCCAAGT TTGACTCTCT AAATTTCCCA
  TCATGTCTAA GAGCCACCCA TATTTCCAAT AAATTATCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650163	NES09017720	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	G	G	G	T	G		T	G	G	T		G
ss147334481	ENSMUSSNP1663823	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320475852	CHEV_2_119341430	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27456015					SNP	T	G	T	G	T	G	G	G	T	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650163	NES09017720	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119346175 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	811 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	512 bp distal
Rr563520	regulatory region 563520	315 bp distal
Rr563521	regulatory region 563521	1196 bp proximal