rs27456014 SNP Detail

Summary

• ID
  rs27456014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119346271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTCATC TCCCCTCCCT
  GCCTCAGGAT TTGGAATTCC AAGTCAGATT ATTCAATCAC AGGAAGATTT ATATTGGCAC
  TCACTCAACA GCTGAGTAGT TATTTCTCCC TCCAGTTCTG CATTATCCTT ATTCTATTTC
  CAAGTTTGAC TCTCTAAATT TCCCATCATG TCTAAGAGCC ACCCATATTT CCAATAAATT
  M
  TCTTTTTGCT TACAGTAGTT GAGTCAGTTC TTGGCTTAGG GGCACACACA CACACACACA
  CACACACATA CACACACACA CACACACACA CACACACGAC ACATTGATGC TCTCTACCTC
  TTTGCCCTGC CTCTCACCAT GTCTTGTGTT TGTCACCCCT CTTGACAGGG ACATTCTCCT
  GCCATGGAGC ACCACCTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650162	NES09017723	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27456014					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650162	NES09017723	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119346271 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	715 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	608 bp distal
Rr563520	regulatory region 563520	411 bp distal
Rr563521	regulatory region 563521	1100 bp proximal