rs27456013 SNP Detail

Summary

• ID
  rs27456013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119346496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCTTGG CTTAGGGGCA
  CACACACACA CACACACACA CACATACACA CACACACACA CACACACACA CACGACACAT
  TGATGCTCTC TACCTCTTTG CCCTGCCTCT CACCATGTCT TGTGTTTGTC ACCCCTCTTG
  ACAGGGACAT TCTCCTGCCA TGGAGCACCA CCTCCTACCT CTTAAGAAGC TCGTCCACAC
  R
  CTCTAGAACC AGTGCAAGTA TCACCTCCTC TCTAAATCTT TTCCGTCTCT CTCCGCATGA
  GCACCAACTG GTATGCCTTG ACCTTTCACA GTGATTTTAC TTAAACATTT TTATTCATGT
  CTCCTATAAG GCCCTAAAGG CTTCTCGTCT GTCTTGGGGG GAGGAACTTG CAACTGTCAT
  TGATGGGAAC TTAGTTCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650161	NES09017713	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G		A	G	A	G		A	G	G	A		G
ss45341453	mCV22553043	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss147334501	ENSMUSSNP2775474	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320475854	CHEV_2_119341751	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27456013					SNP	A	G	A	G	A	G	A	A	G	A	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650161	NES09017713	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119346496 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	490 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	833 bp distal
Rr563520	regulatory region 563520	636 bp distal
Rr563521	regulatory region 563521	875 bp proximal