rs27455941 SNP Detail

Summary

• ID
  rs27455941
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119370716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGCCCGA AGAACACTTT
  CACCCCTGGG ACGCTGCGGC CCGACTCTGC ATTCCTCACT GTGATGGGAA AGAATCCATC
  TGTTTAGTAA CACGTACTAT TTTCCTCCAA ACTGCAAGAA ACTGTGAAAG CTCTTAAAAT
  TACTGAAATA CGAGTTTTAT AAAAACATTT CTTTCTCAAA GTGCAGAGGC AGTTAAATTA
  S
  AAAACTACAC TGTACAACTG AGTGATAAAA TAAACCTCAG AATGTTCTAA AGAAAACAAA
  AACAAAATAA ACAATCAAAA AACTTTTAAA GAGCTAGGTG TGGTGGCACA GGCCTTTAAA
  TCCAGCACTA GGAAGGCAGA GCCAGGCAGA TCTCTTGACT TTAAGGCCAG CTTGGTCTAC
  ATAGCAAGTG CCAGGCTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650082	NES09017088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27455941					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650082	NES09017088	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119370716 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	Intron
Rr563525	regulatory region 563525	1086 bp distal
Rr563526	regulatory region 563526	1968 bp proximal