rs27454150 SNP Detail

Summary

• ID
  rs27454150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120526761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC ATCAAAAAAG CATCAGCGGG
  Y
  GCTGGCAGCT AGGGCCAGAG ACATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37647092	NES09021022	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C		T	C	T		C
ss147366519	ENSMUSSNP591016	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320479449	CHEV_2_120522016	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27454150					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647092	NES09021022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120526761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563727	regulatory region 563727			1980 bp distal
Rr563728	regulatory region 563728			1819 bp proximal
Stard9	StAR related lipid transfer domain containing 9			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant