rs27454144 SNP Detail

Summary

• ID
  rs27454144
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120527773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTGTG ACTCTAAGGT
  CAGTCCCAGC AGTCCCTCAG GGGACATACA TTCTTTATGT CCAAGCCCTG ACATACATGA
  AATTCAGCCC CATGATGAGA AGCCCAAACA CTGGCTAAGC ATTGAAGAAC CAAAGCCACC
  AGGTACCTGC AAACTTCCCC AAAGCAGTAC TGAGCCACCC TGCAGTTCAG ATTTGTATGC
  M
  ACCTCTGCTT CTGATACATC CAAGCCCTCA GTTTGTGAAA GCCAAGGACT CCTTCAGCCA
  GGAGATGGTG GATTCTTTCA GGGCAGAGAA ATGCCTGACA TGACCAACCA GGGTATCTCT
  GAAGAGTCCC ACAATTCTGA CATGTCAAGC GTGCTGGCTC CCTCTGCCAC CTCGTTCACT
  CAAGTATGTA GTGTTAATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37647086	NES09021030	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454144					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647086	NES09021030	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120527773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563728	regulatory region 563728			807 bp proximal
Stard9	StAR related lipid transfer domain containing 9			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant