rs27454142 SNP Detail

Summary

• ID
  rs27454142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120528084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT CCTGGAGGAA GACTCCAGTT
  Y
  CCTGGCTGAA GCTTCTGATA AAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37647083	NES09021036	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T		C	T	T		C	T	C
ss45276233	mCV22574147	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss147366553	ENSMUSSNP4567561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320479456	CHEV_2_120523339	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27454142					SNP	T	T	T	T	T	T	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647083	NES09021036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120528084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563728	regulatory region 563728			496 bp proximal
Stard9	StAR related lipid transfer domain containing 9			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant