rs27453637 SNP Detail

Summary

• ID
  rs27453637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118997658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTCTTTGCT TTTTAGGGAA CCAATCAGAA TGAGTCGGTT
  GAAGAATGTT GACCTGTCTA CTTCTAGATG AGGGCGTGGA CCAGCTAGTT GTGAACTCGC
  Y
  GCCCTCTCTT GGGCATCAGG CTTAGGGATC GACGTTTCTA TGCCTCAGGT GTTACCCTGT
  GATCTGCGCG TGCTCCCAAG GCTCCCTGCA GGAGGAACAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37651169	NES09025445	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27453637					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651169	NES09025445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118997658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	145 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	611 bp upstream
Rr563425	regulatory region 563425	1563 bp distal
Rr563426	regulatory region 563426	106 bp proximal
Rr563427	regulatory region 563427	438 bp proximal
Rr563428	regulatory region 563428	607 bp proximal
Tssr19604	transcription start site region 19604	581 bp upstream
Tssr19605	transcription start site region 19605	605 bp upstream