rs27453636 SNP Detail

Summary

• ID
  rs27453636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118998928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC TTGACAATAC CCAAAGGGCC
  R
  TGAAAACCTG TACAGTTGTT GAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37651168	NES09025446	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27453636					SNP	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651168	NES09025446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118998928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	194 bp distal
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	664 bp distal
Rr563427	regulatory region 563427	811 bp distal
Rr563428	regulatory region 563428	64 bp distal
Tssr19604	transcription start site region 19604	668 bp downstream
Tssr19605	transcription start site region 19605	612 bp downstream