rs27452362 SNP Detail

Summary

• ID
  rs27452362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116726004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGATGG CTCCGTAGTG
  AGAGCCCTGC TGTGAGGTCC ATTTCTAGCC TAGCAGCTGT GTGACGGCCC TGTTACCCCA
  AGGCTGAGCA AACAGAGGCC GGCAGAGCCC AGAGACTTCG GGGCCAATCT GATGGTCACT
  GGGAGTTCCA GGTTCTCAAG ATGTAGAGGA GGAGGGAAAG CAATGTTAAC ATCGGCTTCT
  R
  GGCTCCTCAC ACACACACAC ACACACACAC ACACATGCAC ATACACACAC ATACACACAC
  ATGCACACAC ACATACACAC ACACACACAC ACACACATGC ACACACACAC ACATACACAC
  ACATACACAC ACACACACAC ATACACACAC ACATGCACAT ACACACACAC ACGCATGCAC
  ACACACACAC ACACACATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37658794	NES09035168	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27452362					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37658794	NES09035168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116726004 () rs orientation: forward

Symbol	Name	Function Class
Gm46758	predicted gene, 46758	within coordinates
Rr563025	regulatory region 563025	995 bp distal
Rr563026	regulatory region 563026	1444 bp distal
Rr563027	regulatory region 563027	1281 bp proximal
Rr563028	regulatory region 563028	1520 bp proximal