rs27450809 SNP Detail

Summary

• ID
  rs27450809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:124480741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTATTA GGTACATGCC
  CTCAAGTAGT TCTTTAATTC CTGGTCTGTA ACATGAAGAC TCATTCCTAA TTCAGCAAGC
  AACCATAGAA ACAGATGCTG GGGGTACCAG GCATAGCTGC AGGCTCTAAA GATAAGCAGA
  GAATAGCCCA GACAAGACTT CTGTCCTCGT GCCTCTGACA TGAAGTTTGC TAGGGTTACT
  S
  TGTGTGCCTA AAGGGGTCTA AAAGCCAGAG TAGATAAGAA ATATTTATTT CCTTTAAGTG
  TAAAATGCTA CGAGGGTGAA ATATTGCTCA GTCCCTGGAC TAGGCTGGAT ACCACTGGAG
  AGTTGGGCCT GCTGCTCCCT CCTACAAGCC CGGAATGACT TGTCAACTTT ATCAGTTGGG
  TATAGGGAAG GGCATGGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37638037	NES09003670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27450809					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37638037	NES09003670	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124480741 () rs orientation: forward

Symbol	Name	Function Class
Rr564124	regulatory region 564124	492 bp proximal
Sema6d	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	Intron