rs27450800 SNP Detail

Summary

• ID
  rs27450800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:124481713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGATG GCCTCTTGGC
  TCCTTCAAAG CCTTTAAGGG TTTAAAAGGA AAACCCAGAT TTTTTTTCTA GCCTCCTCTT
  ACCTCCAGGT GTGTTTGATA ATGAAGGTAA GATTAGCAAC CCCTGGGGTG ATTCATAGAG
  GGAGGAAGAA TAAGTGTAGA TAAGGGTTTA CATGTTTGAA GCATGGTTAT CTCCAGCTTT
  R
  GAGCCCCATA CCCTTCCTCA AGGTTGTGGC TTTAGCTTTA AACAGGCTTC CTGATACTCT
  CCCTGAATAA TAACAATTAC AGTGTTCCCC TGTGCCAGGA ACTTCGATAA GCTCTTTAGA
  GGGCCAGTCC TATCCTCCTG GTAATCCTAT GAGGTGGCTA CTCCTATCTT ACCCCATTTA
  CAGGGTAACA GAAGTGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37638028	NES09003679	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27450800					SNP	A	A	A	A	A	A	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37638028	NES09003679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124481713 () rs orientation: forward

Symbol	Name	Function Class
Rr564124	regulatory region 564124	within coordinates
Rr564125	regulatory region 564125	1445 bp proximal
Sema6d	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	Intron