rs27449952 SNP Detail

Summary

• ID
  rs27449952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:124768773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGCAA AAAAAGATGT
  CTGGAACAAC AGGTGACAGT GATGAGGCTG AAAACGATGT TGGTGACACT CAGGACCCGT
  GGAAACTAGC AGTTCACTTC CCACGAGTCT TTGCATCAAC ATTTCTGCCT TTCTCTTCAC
  ACCAACCTCT CTCTTATAAA AGTCAAGCCA TTTTATTGAC TTGCCAAGTC AAATAATGCC
  Y
  AGAAGGGGAA AGTCTAAGGT AGAAAAAGGA GGTTTCACTA GGGAAAGCGA AGAAAGTGCT
  ATCTCAAGGA GGATTAATTG ATTAGAAGCA CAGGCACACT TATTTATCAT CCACTGCCTA
  CCTCTCTGCT GGGCCTTAGG GTATGAAGAA GAATAAAACA GTCCCCTTTC TCTTTATTTT
  CTGCAATTTC CTGTACAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37637081	NES09007703	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27449952					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37637081	NES09007703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124768773 () rs orientation: forward

Symbol	Name	Function Class
Rr564149	regulatory region 564149	1510 bp proximal
Rr564150	regulatory region 564150	1808 bp proximal