rs27449942 SNP Detail

Summary

• ID
  rs27449942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:124770700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTGGG TGGTATGATC
  TGGAAGTCTG CTATGCATTC AGGGGAAATA AGCCTGGGCT GACTGTGCAT AGAGAAGGAA
  GACACTGCCA CCTGCAGGCT CTAAGCTTAG GGAGATAGTA AATGTTTAAT TTATGGGAGA
  TTTGTTTTAT TAAAGTAACA TTTTCATAAA CAGTAAAAGT CTCAAAGTTG GCTCACTTAC
  Y
  CCTGTACCTT TGAGCAACTC CGTTCCACAG TAGTCAAGAA CTGTAGCTAC TAGTGGAGAA
  GCTGGTTCTA AGTTAAAGGT AGCCAATGTT GGCGTTGTTC CGTGGGGACT GAGAACTAGC
  CTGGACCTTG CACAGGTGAC ACTGGGAAAG TGATAAGTAA TTGTCTGCTG ACGTTCTCTT
  TAAACCCTAA GCATACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37637071	NES09007624	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27449942					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37637071	NES09007624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124770700 () rs orientation: forward

Symbol	Name	Function Class
Rr564149	regulatory region 564149	within coordinates
Rr564150	regulatory region 564150	98 bp distal