rs27449937 SNP Detail

Summary

• ID
  rs27449937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:124770998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGTGGGG ACTGAGAACT
  AGCCTGGACC TTGCACAGGT GACACTGGGA AAGTGATAAG TAATTGTCTG CTGACGTTCT
  CTTTAAACCC TAAGCATACT TTGAGCCTCA GTTCCTTTCA TTGTAAGCTA AGGCTATTAG
  ATAAGATTAG ATCGGTGTTT TCCAAACTGT GAATGCTGTG CCAGCATTGG TGGTGAGACC
  R
  GGAATTGTTA ATATTAATTG CATCTGGTTC TATCCCAGGC CTTAGAGTCA GAAACTGCAG
  AAGGCAGGCC TTCAGGTGTG AGGAGTGCTC AGTCATATGA CTTATAAATA TTTAATATGC
  AATTCCTTGC CTCTAAGATG ATGTCATCTG TAGTCCAACT GTCTCCTGGG AAGGTGGAGT
  TTGGGGGTGG GGGAGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37637066	NES09007629	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27449937					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37637066	NES09007629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124770998 () rs orientation: forward

Symbol	Name	Function Class
Rr564149	regulatory region 564149	296 bp distal
Rr564150	regulatory region 564150	396 bp distal