rs27449683 SNP Detail

Summary

• ID
  rs27449683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127303436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGGATGC TGTTTAAAGA
  GAAGAGAGAG AAATAACCCA AAACCAGAGA GAACTGGTTG TTAGGGATCA AAAACAACAA
  CCGCAAGAAA AAAAAAACGG TTTGGAGGAG CAAGGAACTG AAGAGAGACG GGGTGGGAAG
  GGGAGAGGTC GAGAGAGATA CCTCCCAAGG GACAGTGCTG CCAGGACAGA AACTCCAGGC
  R
  GAACTAGAGA AAACGCAGCA AAGTGAGTCA GAGAAATAGA AAGAGTTCCC AGGCCCCACC
  CCCTCCCCGG GACTGCGAGA TCAGCTCCAG CCGAGCCCAT GGGCACAGGT CCTGGTGAGG
  CTGAGCAAAA CTGGCTGCCA AGAGAGTGTT TCCAGAGATA AACACAAAGT CAACTGGGAA
  AACCAATCAA TATCAATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss37629113	NES09004756	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs27449683					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629113	NES09004756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127303436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			838 bp proximal
Rr564529	regulatory region 564529			950 bp proximal
Tssr20021	transcription start site region 20021			1474 bp upstream