rs27449681 SNP Detail

Summary

• ID
  rs27449681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127304112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGATCCC CCAGTCTAGG
  GGACTTGACA GGAGGTCCAA GAGGGCCTGA GGGAGCTGGA ACTCTCTCTC TGCGTCATAT
  TACAATCCTG CAGTCAGTTG GCTAGAGGGG GATGGGAAAG GTGTGTTCCC CATGGAGGCT
  CGTGACATCA CATCTAAACA GGATGGACCA GGAGAGTCAT GGAAACGGTA AAAGGAGACT
  Y
  GGCGCCTAAA ACTTTGGTGT AGGGGTCACC GGATCTTCCC AAAGTCTGCC TCTGGTCTTG
  GAAATCATGA AAACATTTCA AAGGAAAAGC AAGGTGACAT TTCTTACCCT CTTAAGCTTG
  AGGAATGATC ACCAAAGTGT GGGTGTGGTT TACCCAAGCA GAGAAGATTC AAAGTCACCC
  CGAAAGCATG ACCTCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss37629111	NES09004758	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs27449681					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629111	NES09004758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127304112 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			162 bp proximal
Rr564529	regulatory region 564529			274 bp proximal
Tssr20021	transcription start site region 20021			798 bp upstream