rs27449680 SNP Detail

Summary

• ID
  rs27449680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127304141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTCCA AGAGGGCCTG
  AGGGAGCTGG AACTCTCTCT CTGCGTCATA TTACAATCCT GCAGTCAGTT GGCTAGAGGG
  GGATGGGAAA GGTGTGTTCC CCATGGAGGC TCGTGACATC ACATCTAAAC AGGATGGACC
  AGGAGAGTCA TGGAAACGGT AAAAGGAGAC TTGGCGCCTA AAACTTTGGT GTAGGGGTCA
  Y
  CGGATCTTCC CAAAGTCTGC CTCTGGTCTT GGAAATCATG AAAACATTTC AAAGGAAAAG
  CAAGGTGACA TTTCTTACCC TCTTAAGCTT GAGGAATGAT CACCAAAGTG TGGGTGTGGT
  TTACCCAAGC AGAGAAGATT CAAAGTCACC CCGAAAGCAT GACCTCCACC CTGCCCATTC
  CACAGGCTTT CCCCGTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss37629110	NES09004759	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs27449680					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629110	NES09004759	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127304141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			133 bp proximal
Rr564529	regulatory region 564529			245 bp proximal
Tssr20021	transcription start site region 20021			769 bp upstream