rs27449675 SNP Detail

Summary

• ID
  rs27449675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127305371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTTCCTG CAGCAAACTT CTTAGAGGAG AACGTCACAG
  CCAGAAAGTT CCTCAGGAGA CTGGGATGTG TTTCGCACAC AGAGGAGCGT GTGGAAGACT
  R
  GAAGATAGCA GTACTGGGTG ACCTAGAAGG TGCCAGAGGC TCCGCTTCAG CCACAAACAT
  ACCCTGCTTC CCAGACATAT CACCTACCCC AAGATCCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629105	NES09004708	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	A	G	G	G	G	G	A	G
ss147530688	ENSMUSSNP1428062	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27449675					SNP	G	G	G	G	G	G	A	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629105	NES09004708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127305371 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			670 bp distal
Rr564529	regulatory region 564529			964 bp distal
Tssr20021	transcription start site region 20021			457 bp downstream