rs27448133 SNP Detail

Summary

• ID
  rs27448133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:129447131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACCAAGTG TCACTTGTTA TCCCTGATGG GCAGCATAGT
  TCTGTTGTGA TTCTGCAGTC TTTCAGGACT GTGCTTTTAG CTCTCAGATG GCCTTACAGT
  R
  GGATCAGATG GTCCCTTTCC TCGGATGTGA CCCCCCCTGA GGTTTCCACT GCTCCAATAA
  TGCCTGAGTG AATGCGAAGT GTTTGCACGT TCCTTAGTTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37621296	NES09009634	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27448133					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37621296	NES09009634	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129447131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr564956	regulatory region 564956			1419 bp distal
Rr564957	regulatory region 564957			900 bp distal
Rr564958	regulatory region 564958			1024 bp proximal
Sirpa	signal-regulatory protein alpha			Intron
				Noncoding-Transcript-Variant
Tssr20146	transcription start site region 20146			1467 bp downstream