rs27446217 SNP Detail

Summary

• ID
  rs27446217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128135111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAATGAT GCTTCCTGCT
  TTCCTAGCTC ACTGGAGAAG CCAAGTTTCT CCTCCGATAC GGAGACCTTT ATCACCACCT
  TCCAAAGCAT TCACTCTTTC ATCAGCCCTG GCTGGAGTCT CCTGAAAATG ATGGAATTCT
  CATTATGATG AGCCCAAATA CCTCGTACCT TCTTAAAGTG ACTCCCACGA TGTCCCCAAC
  Y
  GTATCCTGTC TGTGACCAAA GACTGTCTTT CTATTTAGGA CCTTTTCCAT TTGTCCCAGC
  TCTCTCTTAA TCTTGTTTGT GTTTCTGACC TATATAACTT CTTGGTGTAA TGAGGGCCAT
  ATGTTTTCTT TACTTACCTA CAGGTTAATG TGGAAGCAAA TGGAAGGTGC TGTCTCTCTT
  CATTTCCACA GCACCTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626244	NES09016533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446217					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626244	NES09016533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128135111 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	1995 bp upstream
Rr564694	regulatory region 564694	1341 bp proximal
Rr564695	regulatory region 564695	1966 bp proximal
Tssr26154	transcription start site region 26154	1808 bp downstream
Tssr26155	transcription start site region 26155	1844 bp downstream