rs27446213 SNP Detail

Summary

• ID
  rs27446213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128135983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCGAGCTT CCAGACTCTC CTGCCCTAAA AGTGGGAATT
  TACATTTTGT TTCTATCTTC AAAGTTTCAC TAGGACATGA ACGATGGTTG CATTCATTAT
  W
  TAATCAGAGG CCATGACCTC AGTAACTACC CAAAAAGGAT TCCTGGGACA GTAACTGCAG
  GTAGAGGTGG TCGGGGGTGG GGTGAGGCAG ACAGGACAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626240	NES09016537	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	T		A	T	A	A	T		A	A	T	A
ss45228381	mCV22523412	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		T
ss147556596	ENSMUSSNP4504946	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446213					SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626240	NES09016537	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128135983 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	1123 bp upstream
Rr564694	regulatory region 564694	469 bp proximal
Rr564695	regulatory region 564695	1094 bp proximal
Rr564696	regulatory region 564696	1742 bp proximal
Tssr26154	transcription start site region 26154	936 bp downstream
Tssr26155	transcription start site region 26155	972 bp downstream