rs27446207 SNP Detail

Summary

• ID
  rs27446207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128138040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGTCTGCT TCCTGAGTCA
  TCTTTGCCTT TTCTGTGACA GACTACTGAT TCCACTGGGA ACACTCTAGC CATGTGGAGT
  CCTTCTGAGT TCCAGGAGTC TATACTGTTG GTCACAGGGA AAGAGAAGGA TCACGGGTTT
  GACAGAGGCT CTGGGGACAG CAGGCCTGGC TATCCAGTGG ACTCCACTGG CAGAGGAGGG
  Y
  TGATATTTTG CTCTGGAGGG AAGCCTGGGT GGAATAGGGT TTCCTTCAGG CTGTGCAGCA
  GTTCAACCAA GAGGCAGTTC AGCAGAGCAA TTGAGCCATA GACAGCAAGC TCTCTCCCCG
  TGTTTATCTC CAGTTTCCAC CTTCGATTCT TCTCAGGAGA CCCAGATCCC TCCACTCTCC
  CCACGCTCAT CTAGGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626234	NES09016453	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446207					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626234	NES09016453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128138040 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	633 bp downstream
Rr564694	regulatory region 564694	486 bp distal
Rr564695	regulatory region 564695	942 bp distal
Rr564696	regulatory region 564696	75 bp distal
Rr564697	regulatory region 564697	734 bp proximal
Rr564698	regulatory region 564698	1764 bp proximal
Tssr26154	transcription start site region 26154	1112 bp upstream
Tssr26155	transcription start site region 26155	1076 bp upstream