rs27446204 SNP Detail

Summary

• ID
  rs27446204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128138314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTCAGC AGAGCAATTG
  AGCCATAGAC AGCAAGCTCT CTCCCCGTGT TTATCTCCAG TTTCCACCTT CGATTCTTCT
  CAGGAGACCC AGATCCCTCC ACTCTCCCCA CGCTCATCTA GGAAATTGGA GCTACCTCAA
  GGATGCCAGG ATCCTCAGAG CCCATTTCTC TGAGCAGCCA GGCTGTTGTG TCAATAGTCC
  R
  AGAACAGAAG AGCCATAGAT CTCAGCCAGG TAGGAGCCTC GTGTAGCCTT GGGGGGTTCA
  AAGGCCCGAC CCCAGTATCT GACCCATCAG CTGCTTTGAT CTGCTGAAGT TTCTTTCTTC
  TACTTCCCAC AGACTTTTAT GATTTTATTA CATGTGTGTT TGCTCTGTTC TGTGACAATT
  GAGGTGAATG AATCAGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626231	NES09016456	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446204					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626231	NES09016456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128138314 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	907 bp downstream
Rr564694	regulatory region 564694	760 bp distal
Rr564695	regulatory region 564695	1216 bp distal
Rr564696	regulatory region 564696	349 bp distal
Rr564697	regulatory region 564697	460 bp proximal
Rr564698	regulatory region 564698	1490 bp proximal
Tssr26154	transcription start site region 26154	1386 bp upstream
Tssr26155	transcription start site region 26155	1350 bp upstream