rs27446203 SNP Detail

Summary

• ID
  rs27446203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128138499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAGCTGC TTTGATCTGC TGAAGTTTCT TTCTTCTACT
  TCCCACAGAC TTTTATGATT TTATTACATG TGTGTTTGCT CTGTTCTGTG ACAATTGAGG
  Y
  GAATGAATCA GAATCACCAA TTGTTTTTCC TTCTAGTCTG CCCAGGTCTG TCACCCCATC
  CTGCTCTGAC CATTTTTTTT TTTTTTTTTT AAGATTTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626230	NES09016457	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446203					SNP	T	T	T	T	T	C	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626230	NES09016457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128138499 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	1092 bp downstream
Rr564694	regulatory region 564694	945 bp distal
Rr564695	regulatory region 564695	1401 bp distal
Rr564696	regulatory region 564696	534 bp distal
Rr564697	regulatory region 564697	275 bp proximal
Rr564698	regulatory region 564698	1305 bp proximal
Tssr26154	transcription start site region 26154	1571 bp upstream
Tssr26155	transcription start site region 26155	1535 bp upstream