rs27445639 SNP Detail

Summary

• ID
  rs27445639
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:86489575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCTTAGT GACAGTCTGT CTCCAAACAA AGGCTTTTCT
  ATACCTCATT CAGTTGGCTT AAACCAAGTT GACGACTGTT TCAGTGTTTT CTCTCACACA
  M
  ACGCCACCTA AGAGATTTCT GAGGGGAAAA AAGAATTCAT TTAAGGAAGG AAAAAGGAAG
  GCATGAAAGA AGAAAGAGAG TAACTCAAGG AAAAAAGGAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37612269	NES09111020	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27445639					SNP	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37612269	NES09111020	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:86489575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Or8k38	olfactory receptor family 8 subfamily K member 38			Intron
				mRNA-UTR