rs27445263 SNP Detail

Summary

• ID
  rs27445263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118186667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGGAAG TGCAGCATCC
  CAGACTTCCT GCATCAGAAT CTTCACTTAA GAGATCCTTT ACACACTGAA ATGTGAGAAC
  GATCGCACAC CAACTCTGCA GAGCTCCAAG GAATCGTGGG AAGCACAAAC AGACCAGCCA
  AAGGCTAAAG ACAGTGAAAG GAGGAAGAAG GAAGAGCAAA CTTCATACGG GTCAGCCTGA
  R
  AGTGGTATCA GTGTTTGGCA GGAAGGCACA CACTGCAAAC GCACACCATG TGGCATTCAG
  TGCCGTCTCT GACAAAATGT ATCAGAATAC TTTTGTAAAC AAGATAAACC AATGTGAGCT
  GGATGACAGT AATACTCTGT GTGTTCATAA TTAGTTTCAC AATTATTCCC AAAAGATTAT
  GACTGATTAA TTAAAATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37653179	NES09022866	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27445263					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653179	NES09022866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118186667 () rs orientation: forward

Symbol	Name	Function Class
Gpr176	G protein-coupled receptor 176	Intron
Rr563221	regulatory region 563221	1792 bp distal