rs27444546 SNP Detail

Summary

• ID
  rs27444546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:87181271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGACGCAG CACCTGGTCA
  CTCTTGCCTG GACGGGCTTA CAAATAGGGG GTTTTGGTTA CTATCAGAAA AGTCATCCTT
  TCCTCCCTCT TAAGAAGCTC TATTTACTTT TTGACTTATT ACTTCATTCC TGAATCAAAC
  AATGAACATC AAATAATATC TACAGCCTGT AGAAGTCCTG CTTGTGTGAG TTCAAGGAAG
  R
  GCCCAGGAGA CATAGTTGTG ACATCAGCTT AATGAAGGAA ATAACCACCA GCTTGCTGTT
  TACAGAGATG GCCCTGAATA GCTCAAGTCT CTCTGTATTT TATTTCAAAG TCATAAAGCA
  TATAATTTCA GCTTTACTTT CTGAAACAAG CTCCACAAAA CTAGGCAATG ATTCTCTGAA
  TGTTTTTCCA TAAGTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	MOLF/EiJ
ss37611077	NES09101735	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	MOLF/EiJ
rs27444546					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37611077	NES09101735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:87181271 () rs orientation: forward

Symbol	Name	Function Class
Or12a1-ps1	olfactory receptor family 12 subfamily A member 1, pseudogene 1	1912 bp upstream