rs27444540 SNP Detail

Summary

• ID
  rs27444540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:87183425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTTAGAGATA TGGTATATAT ATATATTACT CTTCCTAGGA
  TGGTCTTGGG ACTCAAAAAA GAGCTATGTC TTTCATTGCC TGTGCTACAA AACTGTGCTT
  S
  ACTCCTACTC TGGGAGCCAC AAAGGGATTT CTCCTGGCTG TGATGTACAA TGACATTTAT
  GTGGCTGTCG GTAACCCTCT GCTCTATTCT CTACTCCTAA G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	MSM/Ms
ss37611071	NES09101741	PERLEGEN	MM_PANEL2	f	SNP	C			C		G
ss146877414	ENSMUSSNP695388	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	MSM/Ms
rs27444540					SNP	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37611071	NES09101741	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:87183425 () rs orientation: forward

Symbol	Name	Function Class
Or12a1-ps1	olfactory receptor family 12 subfamily A member 1, pseudogene 1	within coordinates