rs27444538 SNP Detail

Summary

• ID
  rs27444538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:87184323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTTAAT TTAATGAATT
  AGTGTCAACT GTATTCAAAA ATGTCATAAC AAAAGCTCAT GCATTTTTAC ATGCAAAGAG
  TTTGATTTAA ATATTACAAC CCAAGTTAAT AACTTATCAT AAAATCAAAA ATCTAGGTTT
  TATCTTTTTA TTTTCTTTCT GGGACTAATA TCCTAAATAA TGACTTTACA CATGCTAGGA
  Y
  TTGTTCACCA GGTAGCTATA TCAAGCTCCT AAATTTATTC AATAGAGTGC ATTGCTATAC
  AACTTTTATA ATATTAGAAG CAGTAGACAG AAATTGTATT TTATGTATGT ATATATATAT
  ATATGTATAT TTTATGTATG TATATATGTA TATATATATA TATATATATA TATATATATA
  TATAATAAAT GGTGATCCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	MOLF/EiJ
ss37611069	NES09101743	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	MOLF/EiJ
rs27444538					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37611069	NES09101743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:87184323 () rs orientation: forward

Symbol	Name	Function Class
Or12a1-ps1	olfactory receptor family 12 subfamily A member 1, pseudogene 1	507 bp downstream