rs27440510 SNP Detail

Summary

• ID
  rs27440510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119449217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTCCT GAAAGACACG
  CTCTCAATAC GCTCAGCGCC AGCATATTGG TATAGTTTGC GGAATAGCGG TCTTCAGCCA
  ATCACGCTAC TGGCCCGCAT CGGAAACCCC ACCCTCGAGG CAGTTCAACC AATGAACTTA
  CAGCAGTCTT AATTTAAACT CCATATATAA GTCGGCTTGT CAACGTCTTG GGTGGCGCCA
  R
  TTTTGAGCCG CTCTGTTTTG AGTTGTGTGG CTGTTTTTCT GGGAATCACC GAGATTGCAG
  AACGCGATGA CCGTCCCCTC TGCAGAGGAG CTGGACTCCT TTAAGTACAG CGACCTGCAA
  AATTTAGCCA AAAGGCTGGG CCTCCGGGCT AACATGAAGG TACCGTGCTG GCTGGCGGTG
  CGGGCAGTTG GGTGGGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649941	NES09029748	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440510					SNP	G	G	G	G	G	A	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649941	NES09029748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119449217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			within coordinates
Nusap1	nucleolar and spindle associated protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			267 bp upstream
Rr397233	regulatory region 397233			within coordinates
Rr563550	regulatory region 563550			428 bp distal
Rr563551	regulatory region 563551			427 bp distal
Rr563552	regulatory region 563552			9 bp distal
Rr563553	regulatory region 563553			1226 bp proximal
Tssr19645	transcription start site region 19645			within coordinates
Tssr25824	transcription start site region 25824			226 bp upstream