rs27440507 SNP Detail

Summary

• ID
  rs27440507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119449815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCCACCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG
  GCATGCGCCA CCACTGCCCA GCTCTTATAA AGACTTCTTA ATGGAAATGC TAATACTTCC
  Y
  GGTACCAAAT GGGAAACGAA GGCCCATAGG ACGTAATCAG TGTAATTTCC ATGCCAGTTA
  TTAGGCAGTT GAAGAAAAAC TACTTTAAAC GACTTCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649938	NES09029726	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T		C	T	C
ss147337171	ENSMUSSNP4376060	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440507					SNP	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649938	NES09029726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119449815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			405 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			865 bp upstream
Rr397233	regulatory region 397233			578 bp downstream
Rr563550	regulatory region 563550			1026 bp distal
Rr563551	regulatory region 563551			1025 bp distal
Rr563552	regulatory region 563552			607 bp distal
Rr563553	regulatory region 563553			628 bp proximal
Rr563554	regulatory region 563554			1596 bp proximal
Tssr19645	transcription start site region 19645			597 bp downstream
Tssr25824	transcription start site region 25824			824 bp upstream