rs27440505 SNP Detail

Summary

• ID
  rs27440505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119450315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTGGAC TTGCTATATT
  GAAGCTTGCC CACATGTATA TACCAGAGAT TTGTACAGCA AACTGCTATT TGCACTAAAT
  CTCTAATTAG TTGTCATAAA TGTTTTTAAA TGGTTTAAAT AGAATAATGT GGCCATAGGT
  ACACCTTTTA TCTGGCTGAA CGGCACTGAA GAGTACTTAG AAATGTTTCT GAGTTTAGTG
  Y
  TTAATGGCTC CCCAACTTAT TGTCTAAAGC TTAGTCCTTC AGGTTTTTGC TATCTTCTCC
  TCTTCCTCCT CCCCCCCCCT TTTTTTTTAA TGAAATAAAG TCTCATTATA CTGCCTGGGC
  TATCCTGGAA AACAGTATAT AGCTTTGAGT AGCCTGAAAC TTATGCTGAG ACTATATATG
  GGCTTGTACC TCCACCGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649936	NES09029728	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440505					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649936	NES09029728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119450315 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			905 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			1365 bp upstream
Rr397233	regulatory region 397233			1078 bp downstream
Rr563550	regulatory region 563550			1526 bp distal
Rr563551	regulatory region 563551			1525 bp distal
Rr563552	regulatory region 563552			1107 bp distal
Rr563553	regulatory region 563553			128 bp proximal
Rr563554	regulatory region 563554			1096 bp proximal
Tssr19645	transcription start site region 19645			1097 bp downstream
Tssr25824	transcription start site region 25824			1324 bp upstream