rs27440503 SNP Detail

Summary

• ID
  rs27440503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119450913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC TCCCTTCTCA TTGTTGCATC
  Y
  TTGGTGAGAT AGTATGTTAA GAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37649934	NES09029649	PERLEGEN	MM_PANEL2	f	SNP			T	T				C	T
ss45358578	mCV22554035	ABI	CRAMUS_MOUSE	f	SNP	T	T			C	T
ss147337197	ENSMUSSNP107	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T				T
ss320476349	CHEV_2_119446168	CHEVERUD	SCREENING_POP	f	SNP							C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27440503					SNP	T	T	T	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649934	NES09029649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119450913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			1503 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			1963 bp upstream
Rr397233	regulatory region 397233			1676 bp downstream
Rr563552	regulatory region 563552			1705 bp distal
Rr563553	regulatory region 563553			within coordinates
Rr563554	regulatory region 563554			498 bp proximal
Tssr19645	transcription start site region 19645			1695 bp downstream
Tssr25824	transcription start site region 25824			1922 bp upstream