rs27440499 SNP Detail

Summary

• ID
  rs27440499
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119452321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGATCT CAGGTGGGCT
  TACTGATCTC ACAGTGGAGG GGTCAGCTAG GAGCTGGGAT TGCATCCATG TATGGTCAAA
  AACTGAGCCC CTAGCTGGGC ACTTGGTGGA TTGCTGGAGA CTAGGAGTGA TGACATGTTA
  ACCCGAAGTC TTCTCTGCAG ACAGCTTGTG GGAAGTAGGA CAGGCGGGCT TTTCCAGCTT
  S
  TACAGGGCAA GCAAGCAGCT TGTATTTATA GACTTAGAGT TGTGCGTGTA TAGCATTTTT
  TTAAGGCCAT GAATTTGAGA AAGAGCAAGG CCAGGTACAT GGGTACATGG AGAGAAGTTG
  GAGGAAAGAG ATGGGCTCTT GGAAGATAGG GTGGGGAGGG CATTATGTAT GTGTGTGTGT
  GTGTGTGTGT GTATAAAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649930	NES09029629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440499					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649930	NES09029629	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119452321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr563553	regulatory region 563553			1198 bp distal
Rr563554	regulatory region 563554			889 bp distal