rs27440439 SNP Detail

Summary

• ID
  rs27440439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119491875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTCAAGGCCA CTTGGCCTAC AAGAGACCTG TCACTAAACA
  AAACTGCCAT GATGAGAAAT GCAGCCTTAG CTTCACAGAG CTGATGATCG ACCCCAAATA
  R
  TTCACGTGTG CCACAAGCTA CCTTGAGAGG CTGTGTCAAC TTTAAAGCAG ATTTTCCTTG
  TGTTTTTAAA AATTATTTAT TTTACCATAA AATATATTTA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649869	NES09028373	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G	A	G
ss147338463	ENSMUSSNP7000559	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440439					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649869	NES09028373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119491875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12124	CpG island 12124			1178 bp proximal
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1			Intron
				Noncoding-Transcript-Variant
Rr397235	regulatory region 397235			1278 bp upstream
Rr563557	regulatory region 563557			948 bp proximal
Rr563558	regulatory region 563558			1394 bp proximal
Tssr25825	transcription start site region 25825			1362 bp downstream