rs27440437 SNP Detail

Summary

• ID
  rs27440437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119493251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC AGTTCCCACC TATGAGAAGG
  Y
  TCCGCTCACC TTCTCAGACC CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37649867	NES09028338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		T	C	C	T
ss320476607	CHEV_2_119488506	CHEVERUD	SCREENING_POP	f	SNP					T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27440437					SNP	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649867	NES09028338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119493251 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12124	CpG island 12124			within coordinates
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr397235	regulatory region 397235			within coordinates
Rr563557	regulatory region 563557			within coordinates
Rr563558	regulatory region 563558			18 bp proximal
Tssr25825	transcription start site region 25825			within coordinates