rs27440436 SNP Detail

Summary

• ID
  rs27440436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119493785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAC AGAGCTTGTG CACACTTCGA
  W
  TAAAATGTTT TCCAACTTGG GGTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37649866	NES09028339	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A		T	A	T		A
ss147338503	ENSMUSSNP460041	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss320476611	CHEV_2_119489040	CHEVERUD	SCREENING_POP	f	SNP							T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27440436					SNP	A	A	A	A	A	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649866	NES09028339	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119493785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	351 bp distal
Gm75025	predicted gene, 75025	1800 bp downstream
Gm75032	predicted gene, 75032	1789 bp upstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	483 bp upstream
Rr397235	regulatory region 397235	332 bp downstream
Rr563557	regulatory region 563557	517 bp distal
Rr563558	regulatory region 563558	within coordinates
Tssr25825	transcription start site region 25825	469 bp upstream